PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast09G070100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family S1Fa-like
Protein Properties Length: 81aa    MW: 8849.57 Da    PI: 10.4802
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast09G070100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA135.31.4e-421180270
                S1FA  2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                        +v ++ea kGlnPG+ivllvv+++ll+f+vgny+ly yaqk+lPP+kkkPvskkklkreklkqGv++PGe
  Brast09G070100.1.p 11 NVIIEEAnKGLNPGMIVLLVVATFLLLFFVGNYALYLYAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 80
                        55677888*************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190131.0E-71280No hitNo description
PfamPF046891.1E-391680IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MAEQFADSAN NVIIEEANKG LNPGMIVLLV VATFLLLFFV GNYALYLYAQ KTLPPKKKKP  60
VSKKKLKREK LKQGVSAPGE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2490225e-88AK249022.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf15n14, mRNA sequence.
GenBankAK2516385e-88AK251638.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf126m03, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239871.23e-50PREDICTED: DNA-binding protein S1FA
RefseqXP_014750935.13e-50PREDICTED: DNA-binding protein S1FA
SwissprotQ7XLX61e-34S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLI1IXF54e-50I1IXF5_BRADI; Uncharacterized protein
STRINGBRADI5G09140.11e-49(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51543563